Latest Cover

Online Office

Contact Us

Issue:ISSN 1000-7083
          CN 51-1193/Q
Director:Sichuan Association for Science and Technology
Sponsored by:Sichuan Society of Zoologists; Chengdu Giant Panda Breeding Research Foundation; Sichuan Association of Wildlife Conservation; Sichuan University
Address:College of Life Sciences, Sichuan University, No.29, Wangjiang Road, Chengdu, Sichuan Province, 610064, China
Tel:+86-28-85410485
Fax:+86-28-85410485
Email:scdwzz@vip.163.com & scdwzz001@163.com
Your Position :Home->Past Journals Catalog->2015 Vol.34 No.4

Population Genetics of Oratosquilla oratoria in Bohai Sea and Yellow Sea
Author of the article:DING Ge, ZHANG Daizhen, ZHANG Huabin, ZHAO Lingling, ZHANG Beibei, TANG Boping
Author's Workplace:1. College of Chemical and Biological Engineering, Yancheng Institute of Technology, Yancheng, Jiangsu Province 224003, China;
2. Jiangsu Provincial Key Laboratory of Coastal Wetland Bio-resources and Environmental Protection, Yancheng Normal University, Yancheng, Jiangsu Province 224051, China
Key Words:Oratosquilla oratoria; population; genetic diversity; genetic divergence
Abstract:148 COⅠ sequences of Oratosquilla oratoria were obtained by PCR in this study. A total of 52 haplotypes and 63 variable sites were identified in 580 sites of 148 sequences. Of all the 11 populations, the highest genetic diversity was observed in Yancheng population according to the average haplotype diversity and nucleotide diversity. And the genetic differentiation coefficient (Fst) between Bohai Sea and Yellow Sea was 0.006 12. The genetic distance among the 11 populations ranged from 0.0009 to 0.0057 as determined by MEGA 4.0 software. However, the average value of genetic distance between Bohai Sea and Yellow Sea was 0.0043. Phylogenetic tree showed that the 52 haplotypes were not clustered according to different populations, but overlapped with each other. In conclusion, there was no significant genetic differentiation between Bohai Sea and Yellow Sea. These results would be helpful for the conservation of germplasm resources of O. oratoria.
2015,34(4): 494-499 收稿日期:2014-12-22
DOI:10.11984/j.issn.1000-7083.2015.04.003
分类号:Q78;Q959.223
基金项目:国家自然科学基金项目(41301050); 江苏省基础研究计划(自然科学基金)资助项目(BK2011421); 江苏省高校自然科学基金重大项目(12KJA180009)和高层次人才项目(XKR2010003)
作者简介:丁鸽,女,博士研究生,研究方向:生物地理学研究
*通讯作者:张代臻,E-mail:zhangdzyc@126.com
参考文献:
冯建彬, 孙悦娜, 程熙, 等. 2008. 我国五大淡水湖日本沼虾线粒体COI基因部分片段序列比较[J]. 水产学报, 32(4): 515-525.
高玉时, 屠云洁, 童海兵, 等. 2007. 6个地方鸡种线粒体COI基因的DNA条形码[J]. 农业生物技术学报, 15(6): 924-930.
关申明, 高邦金. 2008. COI序列:影响动物分类学与生态学的DNA barcode[J]. 生态学杂志, 27(8): 1402-1412.
郭天慧, 孔晓瑜, 陈四清, 等. 2004. 三疣梭子蟹线粒体DNA 16S tRNA 和COI 基因片段序列的比较研究[J]. 中国海洋大学报, 34(1): 22-28.
黄映萍, 王莹, 苗素英. 2010. 粤东海域口虾蛄遗传多样性[J]. 动物学杂志, 46(2): 82-89.
黄宗国. 2008. 中国海洋生物种类与分布[M]. 北京: 海洋出版社.
金珊, 赵青松. 2004. 虾蛄[J]. 生物学通报, 39(6): 17.
李明勇, 黄培春, 孔霞. 2010. 口虾蛄乙酸乙酯提取物对鼻咽癌CNE-2Z细胞增殖和周期的影响[J]. 中华肿瘤防治杂志, 17(2): 98-100.
林月娇, 刘海映, 徐海龙, 等. 2008. 大连近海口虾蛄形态参数关系研究[J]. 大连水产学院学报, 23(3): 215-218.
农业部南海区渔政渔港监督管理局资源环保处. 2006. 南海区渔业统计资料汇编(1985-2005)[G].
王波, 张锡烈, 孙丕喜. 1998. 口虾蛄生物学特征及其人工育苗技术[J]. 黄渤海海洋, 16(2): 64-74.
王春琳, 徐善良. 1996. 口虾蛄的生物学基本特征[J]. 浙江水产学院学报, 15(1): 60-62.
徐敬明, 张俊丽, 方华华, 等. 2006. 相手蟹属两种蟹类线粒体16S tRNA基因序列的比较[J]. 水产科学, 25(9): 443-447.
张代臻, 丁鸽, 张华彬, 等. 2010. 渤海湾口虾蛄线粒体COI基因的遗传多样性研究[J]. 南京师范大学学报, 33(4): 80-83.
Barber PH, Erdmann MV. 2000. Molecular systematics of the Conodactylidae (Stomatopoda) using mitochondrial cytochrome oxidase C (subunit I) DNA sequence data[J]. Journal of Crustacean Biology, 20: 20-36.
Brooks EM, Reinhard JS, Alice FB, et al. 2004. Molecular bar codes detect redundancy and contamination in hairpin bisulfite PCR[J]. Nucleic Acids Research, 32(17): 1-4.
Brown WM, George M, Wilson AC. 1979. Rapid evolution of animal mitochondrial DNA [J]. PNAS, 76(4): 1967-1971.
Du XD, Chen Z, Deng YW, et al. 2009. Comparative analysis of genetic diversity and population structure of Sipunculus nudus as revealed by mitochondrial COI sequences [J]. Biochemical Genetics, 47: 884-891.
Excoffier L, Laval G, Schneider S. 2005. Arlequin ver. 3.01: an integrated software package for population genetics data analysis[J]. Evolutionary Bioinformatics Online, 1: 47-50.
Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation[J]. Journal of Heredity, 89: 415-426.
Huelsenbeck JP, Ronquist F. 2001. MrBayes: bayesian inference of phylogeny. version 2.01[CP]. Distributed by the author. Department of Biology, University of Rochester.
Kocher TD, Thomas WK, Meyer A, et al. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers[J]. Proceedings of the National Academy of Sciences USA, 86: 6196-6200.
Kumar S, Tamura K, Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment[J]. Briefings in Bioinformatics, 5(2): 150-163.
Na-Nakom U, Sukmanomon S, Nakajima M, et al. 2006. mtDNA diversity of the critically endangered Mekong giant catfishes (Pangasianodon gigas Chevey, 1913) and closely related species : implications for conservation[J]. Anim Conserv, 9: 483-494.
Posada D, Crandall KA. 2001. Selecting the best-fit model of nucleotide substitution[J]. Systematic Biology, 50(4): 580-601.
Rozas J, Sánchez-DelBarrio JC, Messeguer X, et al. 2006. DNAsp, DNA polymorphism analyses by the coalescent and other methods[J]. Bioinformatics, 19(18): 2496-2497.
Thompson JD, Gibson TJ, Plewniak F, et al. 1997. The clustal X windows interface: flexible stratehies for multiple sequence alignment aided by quality analysis tools[J]. Nucleic Acids Research, 25(24): 4876-4882.
Tsaousis AD, Martin DP, Ladoukakis ED, et al. 2005. Widespread recombination in published animal mtDNA sequences[J]. Mol Biol Evol, 22: 925-933.
CopyRight©2022 Editorial Office of Sichuan Journal of Zoology 蜀ICP备08107403号-3